J4_5DFE_016

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5DFE_016 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0824

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5DFE|1|XA|G|142
5DFE|1|XA|A|143
5DFE|1|XA|G|144
*
5DFE|1|XA|C|178
5DFE|1|XA|A|179
5DFE|1|XA|U|180
5DFE|1|XA|G|181
5DFE|1|XA|U|182
5DFE|1|XA|G|183
*
5DFE|1|XA|C|194
5DFE|1|XA|A|195
5DFE|1|XA|A|196
5DFE|1|XA|A|197
5DFE|1|XA|G|198
*
5DFE|1|XA|C|219
5DFE|1|XA|G|220
5DFE|1|XA|C|221

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20