J4_5DM6_001

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAG*CACC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5DM6_001 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.0927

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

5DM6|1|X|C|297
5DM6|1|X|G|298
5DM6|1|X|A|299
5DM6|1|X|A|300
5DM6|1|X|G|301
*
5DM6|1|X|C|316
5DM6|1|X|A|317
5DM6|1|X|C|318
5DM6|1|X|C|319
*
5DM6|1|X|G|323
5DM6|1|X|A|324
5DM6|1|X|A|325
*
5DM6|1|X|U|337
5DM6|1|X|G|338
5DM6|1|X|U|339
5DM6|1|X|A|340
5DM6|1|X|G|341

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24