J4_5DM6_002
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAG*CGGAG*CGAGU*GGCGGCAUUAG
- Length
- 25 nucleotides
- Bulged bases
- 5DM6|1|X|A|652
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5DM6_002 not in the Motif Atlas
- Homologous match to J4_4WF9_003
- Geometric discrepancy: 0.2462
- The information below is about J4_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69347.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-F-F-cWW-F-F-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5DM6|1|X|C|600
5DM6|1|X|G|601
5DM6|1|X|A|602
5DM6|1|X|G|603
*
5DM6|1|X|C|624
5DM6|1|X|G|625
5DM6|1|X|G|626
5DM6|1|X|A|627
5DM6|1|X|G|628
*
5DM6|1|X|C|635
5DM6|1|X|G|636
5DM6|1|X|A|637
5DM6|1|X|G|638
5DM6|1|X|U|639
*
5DM6|1|X|G|648
5DM6|1|X|G|649
5DM6|1|X|C|650
5DM6|1|X|G|651
5DM6|1|X|G|651|||A
5DM6|1|X|C|651|||B
5DM6|1|X|A|652
5DM6|1|X|U|653
5DM6|1|X|U|654
5DM6|1|X|A|655
5DM6|1|X|G|656
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain C
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
Coloring options: