J4_5DM6_004

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUUC*GGAAAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

5DM6|1|X|A|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5DM6_004 not in the Motif Atlas

Homologous match to J4_7A0S_005

Geometric discrepancy: 0.0655

The information below is about J4_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5DM6|1|X|G|1310
5DM6|1|X|G|1311
5DM6|1|X|U|1312
5DM6|1|X|U|1313
5DM6|1|X|C|1314
*
5DM6|1|X|G|1338
5DM6|1|X|G|1339
5DM6|1|X|A|1340
5DM6|1|X|A|1341
5DM6|1|X|A|1342
5DM6|1|X|G|1343
*
5DM6|1|X|C|1404
5DM6|1|X|C|1405
*
5DM6|1|X|G|1597
5DM6|1|X|C|1598
5DM6|1|X|C|1599
5DM6|1|X|C|1600
5DM6|1|X|G|1601
5DM6|1|X|U|1602
5DM6|1|X|A|1603
5DM6|1|X|C|1604

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain Q

50S ribosomal protein L23