3D structure

PDB id
5E7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GAG*CAUGUG*CAAAG*CGC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5E7K_015 not in the Motif Atlas
Homologous match to J4_4LFB_002
Geometric discrepancy: 0.1286
The information below is about J4_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_88771.1
Basepair signature
cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
Number of instances in this motif group
1

Unit IDs

5E7K|1|1G|G|142
5E7K|1|1G|A|143
5E7K|1|1G|G|144
*
5E7K|1|1G|C|178
5E7K|1|1G|A|179
5E7K|1|1G|U|180
5E7K|1|1G|G|181
5E7K|1|1G|U|182
5E7K|1|1G|G|183
*
5E7K|1|1G|C|194
5E7K|1|1G|A|195
5E7K|1|1G|A|196
5E7K|1|1G|A|197
5E7K|1|1G|G|198
*
5E7K|1|1G|C|219
5E7K|1|1G|G|220
5E7K|1|1G|C|221

Current chains

Chain 1G
16S rRNA

Nearby chains

Chain BA
30S ribosomal protein S20

Coloring options:


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