J4_5EL4_002

3D structure

PDB id

5EL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

5EL4|1|13|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5EL4_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1723

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5EL4|1|13|G|142
5EL4|1|13|A|143
5EL4|1|13|G|144
*
5EL4|1|13|C|178
5EL4|1|13|A|179
5EL4|1|13|U|180
5EL4|1|13|G|181
5EL4|1|13|U|182
5EL4|1|13|G|183
*
5EL4|1|13|C|194
5EL4|1|13|A|195
5EL4|1|13|A|196
5EL4|1|13|A|197
5EL4|1|13|G|198
*
5EL4|1|13|C|219
5EL4|1|13|G|220
5EL4|1|13|C|221

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain BI

30S ribosomal protein S20