J4_5EL5_015

3D structure

PDB id

5EL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5EL5_015 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1489

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5EL5|1|1G|G|142
5EL5|1|1G|A|143
5EL5|1|1G|G|144
*
5EL5|1|1G|C|178
5EL5|1|1G|A|179
5EL5|1|1G|U|180
5EL5|1|1G|G|181
5EL5|1|1G|U|182
5EL5|1|1G|G|183
*
5EL5|1|1G|C|194
5EL5|1|1G|A|195
5EL5|1|1G|A|196
5EL5|1|1G|A|197
5EL5|1|1G|G|198
*
5EL5|1|1G|C|219
5EL5|1|1G|G|220
5EL5|1|1G|C|221

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain BA

30S ribosomal protein S20