J4_5EL6_015

3D structure

PDB id

5EL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

5EL6|1|1G|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5EL6_015 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.135

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5EL6|1|1G|G|142
5EL6|1|1G|A|143
5EL6|1|1G|G|144
*
5EL6|1|1G|C|178
5EL6|1|1G|A|179
5EL6|1|1G|U|180
5EL6|1|1G|G|181
5EL6|1|1G|U|182
5EL6|1|1G|G|183
*
5EL6|1|1G|C|194
5EL6|1|1G|A|195
5EL6|1|1G|A|196
5EL6|1|1G|A|197
5EL6|1|1G|G|198
*
5EL6|1|1G|C|219
5EL6|1|1G|G|220
5EL6|1|1G|C|221

Current chains

Chain 1G

16S rRNA

Nearby chains

Chain BA

30S ribosomal protein S20