J4_5EL7_012

3D structure

PDB id

5EL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

5EL7|1|14|G|2382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5EL7_012 not in the Motif Atlas

Homologous match to J4_5J7L_027

Geometric discrepancy: 0.1861

The information below is about J4_5J7L_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

5EL7|1|14|C|2285
5EL7|1|14|A|2286
5EL7|1|14|A|2287
5EL7|1|14|A|2288
5EL7|1|14|G|2289
*
5EL7|1|14|C|2343
5EL7|1|14|U|2344
5EL7|1|14|G|2345
5EL7|1|14|A|2346
5EL7|1|14|C|2347
*
5EL7|1|14|G|2370
5EL7|1|14|G|2371
5EL7|1|14|G|2372
*
5EL7|1|14|C|2381
5EL7|1|14|G|2382
5EL7|1|14|G|2383

Current chains

Chain 14

23S rRNA

Nearby chains

Chain 65

50S ribosomal protein L18

Chain E5

50S ribosomal protein L27

Chain M5

50S ribosomal protein L35