J4_5FCI_010

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAUUAAAUC*GCC*GUAAC*GG

Length

19 nucleotides

Bulged bases

5FCI|1|2|A|359

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5FCI_010 not in the Motif Atlas

Homologous match to J4_8P9A_021

Geometric discrepancy: 0.0948

The information below is about J4_8P9A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.1

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW

Number of instances in this motif group

2

Unit IDs

5FCI|1|2|C|99
5FCI|1|2|A|100
5FCI|1|2|U|101
5FCI|1|2|U|102
5FCI|1|2|A|103
5FCI|1|2|A|104
5FCI|1|2|A|105
5FCI|1|2|U|106
5FCI|1|2|C|107
*
5FCI|1|2|G|307
5FCI|1|2|C|308
5FCI|1|2|C|309
*
5FCI|1|2|G|357
5FCI|1|2|U|358
5FCI|1|2|A|359
5FCI|1|2|A|360
5FCI|1|2|C|361
*
5FCI|1|2|G|383
5FCI|1|2|G|384

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A,40S ribosomal protein S11-A (uS17)

Chain D3

40S ribosomal protein S23-A

Chain S4

40S ribosomal protein S4-A

Chain S8

40S ribosomal protein S8-A