J4_5FCI_024

3D structure

PDB id

5FCI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the vacant uL3 W255C mutant 80S yeast ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACUAUG*UU

Length

23 nucleotides

Bulged bases

5FCI|1|6|A|623, 5FCI|1|6|A|1026, 5FCI|1|6|U|1029, 5FCI|1|6|U|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5FCI_024 not in the Motif Atlas

Homologous match to J4_8P9A_022

Geometric discrepancy: 0.0616

The information below is about J4_8P9A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.1

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

5FCI|1|6|A|622
5FCI|1|6|A|623
5FCI|1|6|G|624
*
5FCI|1|6|C|975
5FCI|1|6|G|976
5FCI|1|6|A|977
5FCI|1|6|A|978
5FCI|1|6|A|979
5FCI|1|6|G|980
*
5FCI|1|6|C|1021
5FCI|1|6|C|1022
5FCI|1|6|A|1023
5FCI|1|6|U|1024
5FCI|1|6|A|1025
5FCI|1|6|A|1026
5FCI|1|6|A|1027
5FCI|1|6|C|1028
5FCI|1|6|U|1029
5FCI|1|6|A|1030
5FCI|1|6|U|1031
5FCI|1|6|G|1032
*
5FCI|1|6|U|1103
5FCI|1|6|U|1104

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain c1

40S ribosomal protein S11-A,40S ribosomal protein S11-A (uS17)

Chain c3

40S ribosomal protein S13

Chain c4

40S ribosomal protein S14-A

Chain d2

40S ribosomal protein S22-A

Chain d3

40S ribosomal protein S23-A

Chain d6

40S ribosomal protein S26-A

Chain q1

60S ribosomal protein L41-A