J4_5FDU_009
3D structure
- PDB id
- 5FDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5FDU_009 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.0397
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5FDU|1|1A|C|2297
5FDU|1|1A|A|2298
5FDU|1|1A|A|2299
5FDU|1|1A|A|2300
5FDU|1|1A|G|2301
*
5FDU|1|1A|C|2355
5FDU|1|1A|U|2356
5FDU|1|1A|G|2357
5FDU|1|1A|A|2358
5FDU|1|1A|C|2359
*
5FDU|1|1A|G|2382
5FDU|1|1A|G|2383
5FDU|1|1A|G|2384
*
5FDU|1|1A|C|2393
5FDU|1|1A|G|2394
5FDU|1|1A|G|2395
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 16
- 50S ribosomal protein L33
- Chain 18
- 50S ribosomal protein L35
- Chain 1S
- 50S ribosomal protein L18
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