J4_5FLX_002
3D structure
- PDB id
- 5FLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 40S HCV-IRES complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 5FLX|1|1|A|1083, 5FLX|1|1|C|1085, 5FLX|1|1|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5FLX_002 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.1162
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5FLX|1|1|A|671
5FLX|1|1|A|672
5FLX|1|1|G|673
*
5FLX|1|1|C|1032
5FLX|1|1|G|1033
5FLX|1|1|A|1034
5FLX|1|1|A|1035
5FLX|1|1|A|1036
5FLX|1|1|G|1037
*
5FLX|1|1|C|1078
5FLX|1|1|C|1079
5FLX|1|1|A|1080
5FLX|1|1|U|1081
5FLX|1|1|A|1082
5FLX|1|1|A|1083
5FLX|1|1|A|1084
5FLX|1|1|C|1085
5FLX|1|1|G|1086
5FLX|1|1|A|1087
5FLX|1|1|U|1088
5FLX|1|1|G|1089
*
5FLX|1|1|U|1160
5FLX|1|1|U|1161
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain L
- 40S RIBOSOMAL PROTEIN S11
- Chain N
- 40S RIBOSOMAL PROTEIN S13
- Chain W
- 40S RIBOSOMAL PROTEIN S15A
- Chain X
- 40S RIBOSOMAL PROTEIN S23
- Chain a
- 40S RIBOSOMAL PROTEIN S26
Coloring options: