3D structure

PDB id
5GAE (explore in PDB, NAKB, or RNA 3D Hub)
Description
RNC in complex with a translocating SecYEG
Experimental method
ELECTRON MICROSCOPY
Resolution
3.33 Å

Loop

Sequence
CGAUAAA*UC*GCUU*AG
Length
15 nucleotides
Bulged bases
5GAE|1|A|G|1271, 5GAE|1|A|A|1272, 5GAE|1|A|U|1273, 5GAE|1|A|U|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5GAE_004 not in the Motif Atlas
Homologous match to J4_5J7L_021
Geometric discrepancy: 0.1132
The information below is about J4_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

5GAE|1|A|C|1270
5GAE|1|A|G|1271
5GAE|1|A|A|1272
5GAE|1|A|U|1273
5GAE|1|A|A|1274
5GAE|1|A|A|1275
5GAE|1|A|A|1276
*
5GAE|1|A|U|1294
5GAE|1|A|C|1295
*
5GAE|1|A|G|1645
5GAE|1|A|C|1646
5GAE|1|A|U|1647
5GAE|1|A|U|1648
*
5GAE|1|A|A|2009
5GAE|1|A|G|2010

Current chains

Chain A
23S rRNA

Nearby chains

Chain O
50S ribosomal protein L17
Chain T
50S ribosomal protein L22
Chain b
50S ribosomal protein L32

Coloring options:


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