J4_5GAE_006

3D structure

PDB id

5GAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with a translocating SecYEG

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

5GAE|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5GAE_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0662

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5GAE|1|A|U|1313
5GAE|1|A|C|1314
*
5GAE|1|A|G|1338
5GAE|1|A|G|1339
5GAE|1|A|U|1340
5GAE|1|A|G|1341
5GAE|1|A|A|1342
5GAE|1|A|G|1343
*
5GAE|1|A|C|1404
5GAE|1|A|U|1405
*
5GAE|1|A|A|1597
5GAE|1|A|A|1598
5GAE|1|A|U|1599
5GAE|1|A|C|1600
5GAE|1|A|G|1601
5GAE|1|A|U|1602
5GAE|1|A|A|1603

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain g

Protein translocase subunit SecY