J4_5GAG_008

3D structure

PDB id

5GAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP-SR in the closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5GAG_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0786

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5GAG|1|A|A|1772
5GAG|1|A|A|1773
5GAG|1|A|C|1774
5GAG|1|A|U|1775
5GAG|1|A|G|1776
*
5GAG|1|A|C|1788
5GAG|1|A|A|1789
5GAG|1|A|C|1790
5GAG|1|A|A|1791
5GAG|1|A|G|1792
*
5GAG|1|A|U|1827
5GAG|1|A|G|1828
5GAG|1|A|A|1829
5GAG|1|A|C|1830
*
5GAG|1|A|G|1975
5GAG|1|A|U|1976
5GAG|1|A|A|1977
5GAG|1|A|A|1978
5GAG|1|A|U|1979

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2