J4_5GAH_008

3D structure

PDB id

5GAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC in complex with SRP with detached NG domain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5GAH_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0638

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5GAH|1|A|A|1772
5GAH|1|A|A|1773
5GAH|1|A|C|1774
5GAH|1|A|U|1775
5GAH|1|A|G|1776
*
5GAH|1|A|C|1788
5GAH|1|A|A|1789
5GAH|1|A|C|1790
5GAH|1|A|A|1791
5GAH|1|A|G|1792
*
5GAH|1|A|U|1827
5GAH|1|A|G|1828
5GAH|1|A|A|1829
5GAH|1|A|C|1830
*
5GAH|1|A|G|1975
5GAH|1|A|U|1976
5GAH|1|A|A|1977
5GAH|1|A|A|1978
5GAH|1|A|U|1979

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2