J4_5GAK_006

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GACUG*CAUAGC*GUGAUU*AUUAAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5GAK_006 not in the Motif Atlas

Homologous match to J4_8C3A_006

Geometric discrepancy: 0.4173

The information below is about J4_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAK|1|1|G|2130
5GAK|1|1|A|2131
5GAK|1|1|C|2132
5GAK|1|1|U|2133
5GAK|1|1|G|2134
*
5GAK|1|1|C|2146
5GAK|1|1|A|2147
5GAK|1|1|U|2148
5GAK|1|1|A|2149
5GAK|1|1|G|2150
5GAK|1|1|C|2151
*
5GAK|1|1|G|2185
5GAK|1|1|U|2186
5GAK|1|1|G|2187
5GAK|1|1|A|2188
5GAK|1|1|U|2189
5GAK|1|1|U|2190
*
5GAK|1|1|A|2317
5GAK|1|1|U|2318
5GAK|1|1|U|2319
5GAK|1|1|A|2320
5GAK|1|1|A|2321
5GAK|1|1|C|2322

Current chains

Chain 1

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L43-A

Chain E

60S ribosomal protein L2-A

Chain p

60S ribosomal protein L41-A