J4_5GAK_009

3D structure

PDB id

5GAK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

5GAK|1|1|A|3011

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5GAK_009 not in the Motif Atlas

Homologous match to J4_8C3A_009

Geometric discrepancy: 0.191

The information below is about J4_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5GAK|1|1|U|3010
5GAK|1|1|A|3011
5GAK|1|1|A|3012
*
5GAK|1|1|U|3042
5GAK|1|1|C|3043
*
5GAK|1|1|G|3098
5GAK|1|1|C|3099
5GAK|1|1|U|3100
*
5GAK|1|1|A|3134
5GAK|1|1|U|3135
5GAK|1|1|G|3136

Current chains

Chain 1

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L3

Chain Q

60S ribosomal protein L16-A

Chain X

60S ribosomal protein L23-A