3D structure

PDB id
5GAK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.88 Å

Loop

Sequence
CAAAUAU*AG*UGAU*AG
Length
15 nucleotides
Bulged bases
5GAK|1|1|A|1452, 5GAK|1|1|U|1455
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5GAK_013 not in the Motif Atlas
Homologous match to J4_8P9A_014
Geometric discrepancy: 0.1934
The information below is about J4_8P9A_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_87855.1
Basepair signature
cWW-F-cWW-F-F-F-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

5GAK|1|1|C|1451
5GAK|1|1|A|1452
5GAK|1|1|A|1453
5GAK|1|1|A|1454
5GAK|1|1|U|1455
5GAK|1|1|A|1456
5GAK|1|1|U|1457
*
5GAK|1|1|A|1475
5GAK|1|1|G|1476
*
5GAK|1|1|U|1877
5GAK|1|1|G|1878
5GAK|1|1|A|1879
5GAK|1|1|U|1880
*
5GAK|1|1|A|2352
5GAK|1|1|G|2353

Current chains

Chain 1
25S rRNA

Nearby chains

Chain R
60S ribosomal protein L17-A
Chain T
60S ribosomal protein L19-A
Chain f
60S ribosomal protein L31-A

Coloring options:


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