J4_5H5U_009

3D structure

PDB id

5H5U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanistic insights into the alternative translation termination by ArfA and RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5H5U_009 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0462

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5H5U|1|A|A|1772
5H5U|1|A|A|1773
5H5U|1|A|C|1774
5H5U|1|A|U|1775
5H5U|1|A|G|1776
*
5H5U|1|A|C|1788
5H5U|1|A|A|1789
5H5U|1|A|C|1790
5H5U|1|A|A|1791
5H5U|1|A|G|1792
*
5H5U|1|A|U|1827
5H5U|1|A|G|1828
5H5U|1|A|A|1829
5H5U|1|A|C|1830
*
5H5U|1|A|G|1975
5H5U|1|A|U|1976
5H5U|1|A|A|1977
5H5U|1|A|A|1978
5H5U|1|A|U|1979

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2