J4_5HAU_012

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

5HAU|1|1a|A|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5HAU_012 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1143

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5HAU|1|1a|G|137
5HAU|1|1a|A|138
5HAU|1|1a|G|139
*
5HAU|1|1a|C|173
5HAU|1|1a|A|174
5HAU|1|1a|U|175
5HAU|1|1a|G|176
5HAU|1|1a|U|177
5HAU|1|1a|G|178
*
5HAU|1|1a|C|201
5HAU|1|1a|A|202
5HAU|1|1a|A|203
5HAU|1|1a|A|204
5HAU|1|1a|G|205
*
5HAU|1|1a|C|215
5HAU|1|1a|G|216
5HAU|1|1a|C|217

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20