J4_5HAU_019
3D structure
- PDB id
- 5HAU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UC*GGUUAG*CU*ACCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 5HAU|1|2A|U|1386
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5HAU_019 not in the Motif Atlas
- Homologous match to J4_9DFE_005
- Geometric discrepancy: 0.0597
- The information below is about J4_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_10313.5
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5HAU|1|2A|U|1358
5HAU|1|2A|C|1359
*
5HAU|1|2A|G|1383
5HAU|1|2A|G|1384
5HAU|1|2A|U|1385
5HAU|1|2A|U|1386
5HAU|1|2A|A|1387
5HAU|1|2A|G|1388
*
5HAU|1|2A|C|1449
5HAU|1|2A|U|1450
*
5HAU|1|2A|A|1642
5HAU|1|2A|C|1643
5HAU|1|2A|C|1644
5HAU|1|2A|C|1645
5HAU|1|2A|G|1646
5HAU|1|2A|U|1647
5HAU|1|2A|A|1648
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 25
- 50S ribosomal protein L34
- Chain 2V
- 50S ribosomal protein L23
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