J4_5HAU_023

3D structure

PDB id

5HAU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Bac7(1-19) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

5HAU|1|2A|A|2299

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5HAU_023 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1194

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

5HAU|1|2A|C|2296
5HAU|1|2A|A|2297
5HAU|1|2A|A|2298
5HAU|1|2A|A|2299
5HAU|1|2A|G|2300
*
5HAU|1|2A|C|2354
5HAU|1|2A|U|2355
5HAU|1|2A|G|2356
5HAU|1|2A|A|2357
5HAU|1|2A|C|2358
*
5HAU|1|2A|G|2381
5HAU|1|2A|G|2382
5HAU|1|2A|G|2383
*
5HAU|1|2A|C|2392
5HAU|1|2A|G|2393
5HAU|1|2A|G|2394

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 24

50S ribosomal protein L33

Chain 26

50S ribosomal protein L35

Chain 2Q

50S ribosomal protein L18

Chain 2Y

50S ribosomal protein L27