J4_5HCQ_023
3D structure
- PDB id
- 5HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antimicrobial peptide Oncocin d15-19 bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 5HCQ|1|2A|A|2299
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5HCQ_023 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.114
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5HCQ|1|2A|C|2296
5HCQ|1|2A|A|2297
5HCQ|1|2A|A|2298
5HCQ|1|2A|A|2299
5HCQ|1|2A|G|2300
*
5HCQ|1|2A|C|2354
5HCQ|1|2A|U|2355
5HCQ|1|2A|G|2356
5HCQ|1|2A|A|2357
5HCQ|1|2A|C|2358
*
5HCQ|1|2A|G|2381
5HCQ|1|2A|G|2382
5HCQ|1|2A|G|2383
*
5HCQ|1|2A|C|2392
5HCQ|1|2A|G|2393
5HCQ|1|2A|G|2394
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 26
- 50S ribosomal protein L33
- Chain 28
- 50S ribosomal protein L35
- Chain 2S
- 50S ribosomal protein L18
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