J4_5HCR_001

3D structure

PDB id

5HCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antimicrobial peptide Oncocin 10wt bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5HCR|1|1A|U|431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5HCR_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.066

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

5HCR|1|1A|C|256
5HCR|1|1A|U|257
*
5HCR|1|1A|G|396
5HCR|1|1A|A|397
5HCR|1|1A|G|398
5HCR|1|1A|U|399
5HCR|1|1A|A|400
5HCR|1|1A|C|401
*
5HCR|1|1A|G|425
5HCR|1|1A|G|426
5HCR|1|1A|A|427
5HCR|1|1A|A|428
5HCR|1|1A|U|429
5HCR|1|1A|C|430
5HCR|1|1A|U|431
5HCR|1|1A|G|432
*
5HCR|1|1A|U|447
5HCR|1|1A|A|448
5HCR|1|1A|A|449
5HCR|1|1A|G|450

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28