J4_5IB7_008

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

5IB7|1|14|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IB7_008 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0975

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5IB7|1|14|U|1313
5IB7|1|14|C|1314
*
5IB7|1|14|G|1338
5IB7|1|14|G|1339
5IB7|1|14|U|1340
5IB7|1|14|U|1341
5IB7|1|14|A|1342
5IB7|1|14|G|1343
*
5IB7|1|14|C|1404
5IB7|1|14|U|1405
*
5IB7|1|14|A|1597
5IB7|1|14|C|1598
5IB7|1|14|C|1599
5IB7|1|14|C|1600
5IB7|1|14|G|1601
5IB7|1|14|U|1602
5IB7|1|14|A|1603

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23