J4_5IB7_025

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

5IB7|1|1H|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IB7_025 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1619

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

5IB7|1|1H|C|2285
5IB7|1|1H|A|2286
5IB7|1|1H|A|2287
5IB7|1|1H|A|2288
5IB7|1|1H|G|2289
*
5IB7|1|1H|C|2343
5IB7|1|1H|U|2344
5IB7|1|1H|G|2345
5IB7|1|1H|A|2346
5IB7|1|1H|C|2347
*
5IB7|1|1H|G|2370
5IB7|1|1H|G|2371
5IB7|1|1H|G|2372
*
5IB7|1|1H|C|2381
5IB7|1|1H|G|2382
5IB7|1|1H|G|2383

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain A8

50S ribosomal protein L18

Chain I8

50S ribosomal protein L27

Chain O8

50S ribosomal protein L33

Chain Q8

50S ribosomal protein L35