J4_5IB8_015

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IB8_015 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1246

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5IB8|1|1G|G|142
5IB8|1|1G|A|143
5IB8|1|1G|G|144
*
5IB8|1|1G|C|178
5IB8|1|1G|A|179
5IB8|1|1G|U|180
5IB8|1|1G|G|181
5IB8|1|1G|U|182
5IB8|1|1G|G|183
*
5IB8|1|1G|C|194
5IB8|1|1G|A|195
5IB8|1|1G|A|196
5IB8|1|1G|A|197
5IB8|1|1G|G|198
*
5IB8|1|1G|C|219
5IB8|1|1G|G|220
5IB8|1|1G|C|221

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain BA

30S ribosomal protein S20