J4_5IB8_023

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IB8_023 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0515

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5IB8|1|1H|G|1772
5IB8|1|1H|A|1773
5IB8|1|1H|C|1774
5IB8|1|1H|U|1775
5IB8|1|1H|G|1776
*
5IB8|1|1H|C|1788
5IB8|1|1H|A|1789
5IB8|1|1H|C|1790
5IB8|1|1H|A|1791
5IB8|1|1H|G|1792
*
5IB8|1|1H|C|1827
5IB8|1|1H|G|1828
5IB8|1|1H|A|1829
5IB8|1|1H|C|1830
*
5IB8|1|1H|G|1975
5IB8|1|1H|U|1976
5IB8|1|1H|A|1977
5IB8|1|1H|A|1978
5IB8|1|1H|C|1979

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 13

Small subunit ribosomal RNA; SSU rRNA