J4_5IB8_025

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

5IB8|1|1H|A|2288, 5IB8|1|1H|G|2382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IB8_025 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1616

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

5IB8|1|1H|C|2285
5IB8|1|1H|A|2286
5IB8|1|1H|A|2287
5IB8|1|1H|A|2288
5IB8|1|1H|G|2289
*
5IB8|1|1H|C|2343
5IB8|1|1H|U|2344
5IB8|1|1H|G|2345
5IB8|1|1H|A|2346
5IB8|1|1H|C|2347
*
5IB8|1|1H|G|2370
5IB8|1|1H|G|2371
5IB8|1|1H|G|2372
*
5IB8|1|1H|C|2381
5IB8|1|1H|G|2382
5IB8|1|1H|G|2383

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain A8

50S ribosomal protein L18

Chain I8

50S ribosomal protein L27

Chain Q8

50S ribosomal protein L35