J4_5IBB_023

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IBB_023 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0472

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5IBB|1|1H|G|1772
5IBB|1|1H|A|1773
5IBB|1|1H|C|1774
5IBB|1|1H|U|1775
5IBB|1|1H|G|1776
*
5IBB|1|1H|C|1788
5IBB|1|1H|A|1789
5IBB|1|1H|C|1790
5IBB|1|1H|A|1791
5IBB|1|1H|G|1792
*
5IBB|1|1H|C|1827
5IBB|1|1H|G|1828
5IBB|1|1H|A|1829
5IBB|1|1H|C|1830
*
5IBB|1|1H|G|1975
5IBB|1|1H|U|1976
5IBB|1|1H|A|1977
5IBB|1|1H|A|1978
5IBB|1|1H|C|1979

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2