J4_5IMQ_016

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

5IMQ|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IMQ_016 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.2916

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5IMQ|1|A|G|142
5IMQ|1|A|A|143
5IMQ|1|A|G|144
*
5IMQ|1|A|C|178
5IMQ|1|A|A|179
5IMQ|1|A|U|180
5IMQ|1|A|G|181
5IMQ|1|A|U|182
5IMQ|1|A|G|183
*
5IMQ|1|A|C|194
5IMQ|1|A|A|195
5IMQ|1|A|A|196
5IMQ|1|A|A|197
5IMQ|1|A|G|198
*
5IMQ|1|A|C|219
5IMQ|1|A|G|220
5IMQ|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain X

30S ribosomal protein S20