J4_5IMR_015

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

5IMR|1|4|U|8, 5IMR|1|4|U|47, 5IMR|1|4|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IMR_015 not in the Motif Atlas

Homologous match to J4_4TUE_004

Geometric discrepancy: 0.2468

The information below is about J4_4TUE_004

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5IMR|1|4|G|7
5IMR|1|4|U|8
5IMR|1|4|G|9
5IMR|1|4|G|10
*
5IMR|1|4|C|25
5IMR|1|4|G|26
5IMR|1|4|U|27
*
5IMR|1|4|A|43
5IMR|1|4|A|44
5IMR|1|4|G|45
5IMR|1|4|G|46
5IMR|1|4|U|47
5IMR|1|4|C|48
5IMR|1|4|G|49
*
5IMR|1|4|C|65
5IMR|1|4|C|66

Current chains

Chain 4

P site- tRNA

Nearby chains

Chain D

Large subunit ribosomal RNA; LSU rRNA

Chain Q

30S ribosomal protein S13

Chain i

50S ribosomal protein L16

Chain s

50S ribosomal protein L27