J4_5IT8_001

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5IT8|1|AA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IT8_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.0367

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5IT8|1|AA|G|115
5IT8|1|AA|A|116
5IT8|1|AA|G|117
5IT8|1|AA|U|118
5IT8|1|AA|A|119
5IT8|1|AA|A|120
5IT8|1|AA|U|121
5IT8|1|AA|G|122
*
5IT8|1|AA|U|239
5IT8|1|AA|G|240
*
5IT8|1|AA|C|286
5IT8|1|AA|U|287
5IT8|1|AA|A|288
5IT8|1|AA|G|289
*
5IT8|1|AA|C|311
5IT8|1|AA|C|312

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17