J4_5IT8_005

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5IT8|1|BA|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IT8_005 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0371

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5IT8|1|BA|G|142
5IT8|1|BA|A|143
5IT8|1|BA|G|144
*
5IT8|1|BA|C|178
5IT8|1|BA|A|179
5IT8|1|BA|U|180
5IT8|1|BA|A|181
5IT8|1|BA|A|182
5IT8|1|BA|C|183
5IT8|1|BA|G|184
*
5IT8|1|BA|C|193
5IT8|1|BA|C|194
5IT8|1|BA|A|195
5IT8|1|BA|A|196
5IT8|1|BA|A|197
5IT8|1|BA|G|198
*
5IT8|1|BA|U|219
5IT8|1|BA|G|220
5IT8|1|BA|C|221

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BT

30S ribosomal protein S20