J4_5IT8_018

3D structure

PDB id

5IT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5IT8|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IT8_018 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0328

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5IT8|1|DA|C|268
5IT8|1|DA|C|269
*
5IT8|1|DA|G|370
5IT8|1|DA|A|371
5IT8|1|DA|G|372
5IT8|1|DA|U|373
5IT8|1|DA|A|374
5IT8|1|DA|G|375
*
5IT8|1|DA|U|399
5IT8|1|DA|G|400
5IT8|1|DA|A|401
5IT8|1|DA|A|402
5IT8|1|DA|U|403
5IT8|1|DA|A|404||A
5IT8|1|DA|U|405
5IT8|1|DA|G|406
*
5IT8|1|DA|C|421
5IT8|1|DA|A|422
5IT8|1|DA|A|423
5IT8|1|DA|G|424

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DH

50S ribosomal protein L9

Chain DY

50S ribosomal protein L28