J4_5IT8_028
3D structure
- PDB id
- 5IT8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution structure of the Escherichia coli ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5IT8_028 not in the Motif Atlas
- Homologous match to J4_5J7L_028
- Geometric discrepancy: 0.0468
- The information below is about J4_5J7L_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5IT8|1|DA|G|2643
5IT8|1|DA|G|2644
5IT8|1|DA|G|2645
5IT8|1|DA|C|2646
*
5IT8|1|DA|G|2674
5IT8|1|DA|A|2675
5IT8|1|DA|C|2676
*
5IT8|1|DA|G|2731
5IT8|1|DA|G|2732
5IT8|1|DA|A|2733
5IT8|1|DA|A|2734
5IT8|1|DA|G|2735
*
5IT8|1|DA|U|2769
5IT8|1|DA|G|2770
5IT8|1|DA|C|2771
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DD
- 50S ribosomal protein L3
- Chain DK
- 50S ribosomal protein L13
- Chain DL
- 50S ribosomal protein L14
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