J4_5IWA_002

3D structure

PDB id

5IWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with the GE81112 peptide antibiotic

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5IWA_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1065

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5IWA|1|A|G|142
5IWA|1|A|A|143
5IWA|1|A|G|144
*
5IWA|1|A|C|178
5IWA|1|A|A|179
5IWA|1|A|U|180
5IWA|1|A|G|181
5IWA|1|A|U|182
5IWA|1|A|G|183
*
5IWA|1|A|C|194
5IWA|1|A|A|195
5IWA|1|A|A|196
5IWA|1|A|A|197
5IWA|1|A|G|198
*
5IWA|1|A|C|219
5IWA|1|A|G|220
5IWA|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20