J4_5J3C_011

3D structure

PDB id

5J3C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S termination complex containing E. coli RF1

Experimental method

X-RAY DIFFRACTION

Resolution

3.04 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J3C_011 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0487

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5J3C|1|RA|G|1772
5J3C|1|RA|A|1773
5J3C|1|RA|C|1774
5J3C|1|RA|U|1775
5J3C|1|RA|G|1776
*
5J3C|1|RA|C|1788
5J3C|1|RA|A|1789
5J3C|1|RA|C|1790
5J3C|1|RA|A|1791
5J3C|1|RA|G|1792
*
5J3C|1|RA|C|1827
5J3C|1|RA|G|1828
5J3C|1|RA|A|1829
5J3C|1|RA|C|1830
*
5J3C|1|RA|G|1975
5J3C|1|RA|U|1976
5J3C|1|RA|A|1977
5J3C|1|RA|A|1978
5J3C|1|RA|C|1979

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2