J4_5J4B_028

3D structure

PDB id

5J4B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

5J4B|1|2a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J4B_028 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0948

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5J4B|1|2a|G|142
5J4B|1|2a|A|143
5J4B|1|2a|G|144
*
5J4B|1|2a|C|178
5J4B|1|2a|A|179
5J4B|1|2a|U|180
5J4B|1|2a|G|181
5J4B|1|2a|U|182
5J4B|1|2a|G|183
*
5J4B|1|2a|C|194
5J4B|1|2a|A|195
5J4B|1|2a|A|196
5J4B|1|2a|A|197
5J4B|1|2a|G|198
*
5J4B|1|2a|C|219
5J4B|1|2a|G|220
5J4B|1|2a|C|221

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20