J4_5J4D_003
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 5J4D|1|A|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5J4D_003 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0463
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
5J4D|1|A|G|575
5J4D|1|A|G|576
5J4D|1|A|G|577
*
5J4D|1|A|C|764
5J4D|1|A|G|765
5J4D|1|A|A|766
5J4D|1|A|A|767
5J4D|1|A|A|768
5J4D|1|A|G|769
*
5J4D|1|A|C|810
5J4D|1|A|C|811
5J4D|1|A|C|812
5J4D|1|A|U|813
5J4D|1|A|A|814
5J4D|1|A|A|815
5J4D|1|A|A|816
5J4D|1|A|C|817
5J4D|1|A|G|818
5J4D|1|A|A|819
5J4D|1|A|U|820
5J4D|1|A|G|821
*
5J4D|1|A|C|879
5J4D|1|A|C|880
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain QA
- 30S ribosomal protein S8
- Chain UA
- 30S ribosomal protein S12
- Chain XA
- 30S ribosomal protein S15
- Chain ZA
- 30S ribosomal protein S17
Coloring options: