J4_5J4D_017

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J4D_017 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0904

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5J4D|1|FB|G|142
5J4D|1|FB|A|143
5J4D|1|FB|G|144
*
5J4D|1|FB|C|178
5J4D|1|FB|A|179
5J4D|1|FB|U|180
5J4D|1|FB|G|181
5J4D|1|FB|U|182
5J4D|1|FB|G|183
*
5J4D|1|FB|C|194
5J4D|1|FB|A|195
5J4D|1|FB|A|196
5J4D|1|FB|A|197
5J4D|1|FB|G|198
*
5J4D|1|FB|C|219
5J4D|1|FB|G|220
5J4D|1|FB|C|221

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain HD

30S ribosomal protein S20