J4_5J4D_024

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

5J4D|1|GB|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J4D_024 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.0808

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5J4D|1|GB|U|1313
5J4D|1|GB|C|1314
*
5J4D|1|GB|G|1338
5J4D|1|GB|G|1339
5J4D|1|GB|U|1340
5J4D|1|GB|U|1341
5J4D|1|GB|A|1342
5J4D|1|GB|G|1343
*
5J4D|1|GB|C|1404
5J4D|1|GB|U|1405
*
5J4D|1|GB|A|1597
5J4D|1|GB|C|1598
5J4D|1|GB|C|1599
5J4D|1|GB|C|1600
5J4D|1|GB|G|1601
5J4D|1|GB|U|1602
5J4D|1|GB|A|1603

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain JC

50S ribosomal protein L34

Chain ZB

50S ribosomal protein L23