J4_5J4D_026

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J4D_026 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0486

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5J4D|1|GB|G|1772
5J4D|1|GB|A|1773
5J4D|1|GB|C|1774
5J4D|1|GB|U|1775
5J4D|1|GB|G|1776
*
5J4D|1|GB|C|1788
5J4D|1|GB|A|1789
5J4D|1|GB|C|1790
5J4D|1|GB|A|1791
5J4D|1|GB|G|1792
*
5J4D|1|GB|C|1827
5J4D|1|GB|G|1828
5J4D|1|GB|A|1829
5J4D|1|GB|C|1830
*
5J4D|1|GB|G|1975
5J4D|1|GB|U|1976
5J4D|1|GB|A|1977
5J4D|1|GB|A|1978
5J4D|1|GB|C|1979

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain FB

Small subunit ribosomal RNA; SSU rRNA

Chain JB

50S ribosomal protein L2