J4_5J4D_028
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 5J4D|1|GB|A|2288, 5J4D|1|GB|G|2382
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5J4D_028 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1115
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5J4D|1|GB|C|2285
5J4D|1|GB|A|2286
5J4D|1|GB|A|2287
5J4D|1|GB|A|2288
5J4D|1|GB|G|2289
*
5J4D|1|GB|C|2343
5J4D|1|GB|U|2344
5J4D|1|GB|G|2345
5J4D|1|GB|A|2346
5J4D|1|GB|C|2347
*
5J4D|1|GB|G|2370
5J4D|1|GB|G|2371
5J4D|1|GB|G|2372
*
5J4D|1|GB|C|2381
5J4D|1|GB|G|2382
5J4D|1|GB|G|2383
Current chains
- Chain GB
- 25S ribosomal RNA
Nearby chains
- Chain CC
- 50S ribosomal protein L27
- Chain IC
- 50S ribosomal protein L33
- Chain KC
- 50S ribosomal protein L35
- Chain UB
- 50S ribosomal protein L18
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