J4_5J5B_014

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5J5B_014 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0544

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5J5B|1|CA|A|1772
5J5B|1|CA|A|1773
5J5B|1|CA|C|1774
5J5B|1|CA|U|1775
5J5B|1|CA|G|1776
*
5J5B|1|CA|C|1788
5J5B|1|CA|A|1789
5J5B|1|CA|C|1790
5J5B|1|CA|A|1791
5J5B|1|CA|G|1792
*
5J5B|1|CA|U|1827
5J5B|1|CA|G|1828
5J5B|1|CA|A|1829
5J5B|1|CA|C|1830
*
5J5B|1|CA|G|1975
5J5B|1|CA|U|1976
5J5B|1|CA|A|1977
5J5B|1|CA|A|1978
5J5B|1|CA|U|1979

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2