J4_5J5B_027
3D structure
- PDB id
- 5J5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the WT E coli ribosome bound to tetracycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 5J5B|1|DA|A|2288, 5J5B|1|DA|G|2382
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5J5B_027 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.0334
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5J5B|1|DA|C|2285
5J5B|1|DA|G|2286
5J5B|1|DA|A|2287
5J5B|1|DA|A|2288
5J5B|1|DA|G|2289
*
5J5B|1|DA|U|2343
5J5B|1|DA|U|2344
5J5B|1|DA|G|2345
5J5B|1|DA|A|2346
5J5B|1|DA|C|2347
*
5J5B|1|DA|G|2370
5J5B|1|DA|G|2371
5J5B|1|DA|U|2372
*
5J5B|1|DA|A|2381
5J5B|1|DA|G|2382
5J5B|1|DA|G|2383
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D2
- 50S ribosomal protein L33
- Chain D4
- 50S ribosomal protein L35
- Chain DP
- 50S ribosomal protein L18
- Chain DX
- 50S ribosomal protein L27
Coloring options: