J4_5J8A_016
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 5J8A|1|CA|A|2288, 5J8A|1|CA|G|2382
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5J8A_016 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.1028
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5J8A|1|CA|C|2285
5J8A|1|CA|G|2286
5J8A|1|CA|A|2287
5J8A|1|CA|A|2288
5J8A|1|CA|G|2289
*
5J8A|1|CA|U|2343
5J8A|1|CA|U|2344
5J8A|1|CA|G|2345
5J8A|1|CA|A|2346
5J8A|1|CA|C|2347
*
5J8A|1|CA|G|2370
5J8A|1|CA|G|2371
5J8A|1|CA|U|2372
*
5J8A|1|CA|A|2381
5J8A|1|CA|G|2382
5J8A|1|CA|G|2383
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C2
- 50S ribosomal protein L33
- Chain C4
- 50S ribosomal protein L35
- Chain CP
- 50S ribosomal protein L18
- Chain CX
- 50S ribosomal protein L27
Coloring options: