J4_5J8A_025
3D structure
- PDB id
- 5J8A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E coli 70S ribosome with the U1052G mutation in 16S rRNA bound to tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AACUG*CACAG*UGAC*GUAAU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5J8A_025 not in the Motif Atlas
- Homologous match to J4_5J7L_025
- Geometric discrepancy: 0.0233
- The information below is about J4_5J7L_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5J8A|1|DA|A|1772
5J8A|1|DA|A|1773
5J8A|1|DA|C|1774
5J8A|1|DA|U|1775
5J8A|1|DA|G|1776
*
5J8A|1|DA|C|1788
5J8A|1|DA|A|1789
5J8A|1|DA|C|1790
5J8A|1|DA|A|1791
5J8A|1|DA|G|1792
*
5J8A|1|DA|U|1827
5J8A|1|DA|G|1828
5J8A|1|DA|A|1829
5J8A|1|DA|C|1830
*
5J8A|1|DA|G|1975
5J8A|1|DA|U|1976
5J8A|1|DA|A|1977
5J8A|1|DA|A|1978
5J8A|1|DA|U|1979
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain DC
- 50S ribosomal protein L2
Coloring options: